PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

Plant Transcription Factor Database

v4.0

Previous version: v3.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G30770.2

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 831aa MW: 93868.3 Da PI: 6.8657

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G30770.2	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.7	2.8e-50	461	589	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrFhPtd el v+yLk+k+ gk+l++ ++++e+d+yk+ PwdLp k +++++++ewyfF++rd+ky++g+r+nr+t++gyWkatgkd++v OGLUM04G30770.2 461 LPPGFRFHPTDVELTVYYLKRKLLGKHLRC-NAVSELDLYKFAPWDLPeKsSLQSKDREWYFFCPRDRKYSSGSRTNRSTEAGYWKATGKDRPV 553 79**************************.89**********95357788999******************************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrle 129 + ++++vg+k+tLvf+ g+ p+g +tdWvm eyrle OGLUM04G30770.2 554 IY-NSQTVGMKRTLVFHLGKPPRGDRTDWVMYEYRLE 589 .999*****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03016	4.0E-42	53	340	IPR004263	Exostosin-like
SuperFamily	SSF101941	8.24E-61	452	611	IPR003441	NAC domain
PROSITE profile	PS51005	56.488	461	611	IPR003441	NAC domain
Pfam	PF02365	6.1E-26	462	588	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005768	Cellular Component	endosome
GO:0005802	Cellular Component	trans-Golgi network
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 831 aa Download sequence Send to blast
MRSSHQPLCT RAHQAAALLL VAATFFLTRL LDRSPLSAPP PPCAAPYSPW PHRDLRIYVY 60 AEDEVDGLRA LLRGRNDDVT AATCIKGQWG TQVKIHQLLL SSRFRTFDKD EADLFFVPTY 120 VKCVRMTGKL NDKEINQTYV KVVLSQMPYF RRSGGRDHIF VFPSGAGAHL FRSWATFLNR 180 SIILTPEGDR TDKRGISAFN TWKDIIIPGN VDDSMVKSDR LAVKPIPLTK RKYLANFLGR 240 AQGKVGRLQL VKLAKQYPDK LESPELKLSG PDKLGRIDYF KHLRNAKFCL APRGESSWTL 300 RFYESFFVEC VPVILSDEVE LPFQNVIDYT EVSIKWPASK IGPGLLEYLE SIPDGRVEEM 360 IGRGREIRCL WVYAADTERC SAMSAIMWEL QRKVRRFHQS AETFWLHNRS IVNRDLVEFH 420 EWRTPHHHLL SAAAPHFLPS PTATTSYRQR SILLSMAKTS LPPGFRFHPT DVELTVYYLK 480 RKLLGKHLRC NAVSELDLYK FAPWDLPEKS SLQSKDREWY FFCPRDRKYS SGSRTNRSTE 540 AGYWKATGKD RPVIYNSQTV GMKRTLVFHL GKPPRGDRTD WVMYEYRLED KELSASGVKL 600 DACVLCKIFQ KSGPGPKIGE QYGAPFNEDD WNEANGELSS FAFSVPPCAL ESSNGRLNTA 660 GQQLAVSDNI GSSLDHCSET NDKIAVGGCG TTSPSVPFDT IHTQQLAEII SCFSTDLLNS 720 VSRDGSLPDS TADYDNDNEV SSDDGEAIFN ELDELDSQSD ESISNHCNSC GEDLIPPTLE 780 VLKTEQYLEL NDLSFSLADD PDPCNLLLTT NLSDQNHPEL ETSSNRKALR L

Sequence ? help Back to Top

Protein Sequence Length: 831 aa Download sequence Send to blast

MRSSHQPLCT RAHQAAALLL VAATFFLTRL LDRSPLSAPP PPCAAPYSPW PHRDLRIYVY  60
AEDEVDGLRA LLRGRNDDVT AATCIKGQWG TQVKIHQLLL SSRFRTFDKD EADLFFVPTY  120
VKCVRMTGKL NDKEINQTYV KVVLSQMPYF RRSGGRDHIF VFPSGAGAHL FRSWATFLNR  180
SIILTPEGDR TDKRGISAFN TWKDIIIPGN VDDSMVKSDR LAVKPIPLTK RKYLANFLGR  240
AQGKVGRLQL VKLAKQYPDK LESPELKLSG PDKLGRIDYF KHLRNAKFCL APRGESSWTL  300
RFYESFFVEC VPVILSDEVE LPFQNVIDYT EVSIKWPASK IGPGLLEYLE SIPDGRVEEM  360
IGRGREIRCL WVYAADTERC SAMSAIMWEL QRKVRRFHQS AETFWLHNRS IVNRDLVEFH  420
EWRTPHHHLL SAAAPHFLPS PTATTSYRQR SILLSMAKTS LPPGFRFHPT DVELTVYYLK  480
RKLLGKHLRC NAVSELDLYK FAPWDLPEKS SLQSKDREWY FFCPRDRKYS SGSRTNRSTE  540
AGYWKATGKD RPVIYNSQTV GMKRTLVFHL GKPPRGDRTD WVMYEYRLED KELSASGVKL  600
DACVLCKIFQ KSGPGPKIGE QYGAPFNEDD WNEANGELSS FAFSVPPCAL ESSNGRLNTA  660
GQQLAVSDNI GSSLDHCSET NDKIAVGGCG TTSPSVPFDT IHTQQLAEII SCFSTDLLNS  720
VSRDGSLPDS TADYDNDNEV SSDDGEAIFN ELDELDSQSD ESISNHCNSC GEDLIPPTLE  780
VLKTEQYLEL NDLSFSLADD PDPCNLLLTT NLSDQNHPEL ETSSNRKALR L

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	2e-49	457	612	11	169	Stress-induced transcription factor NAC1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK064646	0.0	AK064646.1 Oryza sativa Japonica Group cDNA clone:002-114-D03, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015697732.1	0.0	PREDICTED: probable glucuronosyltransferase Os03g0107900
TrEMBL	A0A0D9ZSW8	0.0	A0A0D9ZSW8_9ORYZ; Uncharacterized protein
STRING	BGIOSGA015889-PA	0.0	(Oryza sativa Indica Group)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G09330.4	7e-78	NAC domain containing protein 82